| Album | West of Ireland, The [with Boys of the Lough] | 1998 |
| Album | Lochaber No More [with Boys of the Lough] | 1975 |
| Album | Aly Bain & Young Champions
| |
| Album | Lonely Bird | 1992 |
| Album | Sweet Rural Shade [with Boys of the Lough] | 1988 |
| Album | Second Album [with Boys of the Lough] | 1973 |
| Album | First Album | 1984 |
| Album | Ruby, The [with Phil Cunningham] | 1997 |
| Album | Open Road [with Boys of the Lough] | 1983 |
| Album | Far From Home [with Boys of the Lough] | 1986 |
| Album | Fair Hills of Ireland, The [with Boys of the Lough] | 1992 |
| Album | Spring the Summer Long [with Phil Cunningham] | 2002 |
| Album | In the Tradition [with Boys of the Lough] | 1981 |
| Album | Boys of the Lough, The [with Boys of the Lough] | 1973 |
| Album | Recorded Live [with Boys of the Lough] | 1975 |
| Album | Live at Carnegie Hall [with Boys of the Lough] | 1989 |
| Album | Best of Aly Bain & Phil Cunningham | 2004 |
| Album | Pearl, The [with Phil Cunningham] | 1994 |
| Album | Follow the Moonstone
| |
| Album | Regrouped [with Boys of the Lough] | 1980 |
| Album | Piper's Broken Finger, The [with Boys of the Lough] | 1976 |
| Album | Wish You Were Here [with Boys of the Lough] | 1978 |
| Album | Welcoming Paddy Home [with Boys of the Lough] | 1986 |
| Album | Fully Rigged | 2002 |
| Album | Good Friends - Good Music [with Boys of the Lough] | 1977 |
| Album | Another Gem [with Phil Cunningham] | 2001 |
| Album | Farewell and Remember Me [with Boys of the Lough] | 1987 |
| Album | Aly Bain and Friends | 1994 |
| Album | Day Dawn, The [with Boys of the Lough] | 1994 |
